Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage
Yıl: 2020 Cilt: 4 Sayı: 3 Sayfa Aralığı: 319 - 333 Metin Dili: İngilizce DOI: 10.31015/jaefs.2020.3.11 İndeks Tarihi: 03-10-2020
Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage
Öz: Changes in the structure of the rhizosphere microbiome are influenced by many factors. In the current investigation,the microbial community composition in the rhizosphere of four potato cultivars was monitored using the soil dilutionplating technique on specific media. Tested cultivars were grown for two consecutive cropping seasons. Initial soilsamples were collected before planting to assess the initial microbial soil species pool. During the growing period,rhizosphere samples were collected at three timing points. For both cropping seasons, the pH and EC of the rhizosphere varied upon sampling periods but not between cultivars. Bacterial and fungal populations at both croppingseasons and that of actinomycetes at the late-season crop were significantly increased by 35-55%, 14-18% and 17-42%, respectively, in the rhizosphere of all grown potato cultivars as compared to the initial soil stage. The relativeabundance of Pseudomonas spp., actinomycetes, Aspergillus spp., and Fusarium spp. populations for all potato cultivars combined were 17.4, 26-64, 51-59 and 10-14% higher at the late-season than at the extra-early cropping season, respectively. For both cropping seasons and all sampled soils combined, the highest abundancies of fungal andactinomycetes communities were recorded at plant senescence and 15 days post-harvest. The total culturable bacteriawere more relevant at plant emergence and 15 days post-harvest for the late-season crop and at plant senescence forthe extra-early crop. The total culturable bacteria were more abundant in the rhizosphere of cvs. Spunta, Elata andEl-Mundo at the late-season crop and that of cvs. Spunta and El-Mundo for the extra-early trial. The highest Pseudomonas spp. populations were associated to cvs. Cerata, Elata, and El-Mundo for the late-season crop and to Spunta,Elata and El-Mundo for the extra-early crop. The highest fungi counts were noted in the rhizosphere of cv. El-Mundoat the late-season crop and in Spunta for the extra-early trial.
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- Barnett, H.L., Hunter, B.B. (1987). Illustrated genera of imperfect fungi. MacMillan Publishing Company, New York, 218 p.
- Berendsen, R.L., Pieterse, C.M.J., Bakker, P.H.M. (2012). The rhizosphere microbiome and plant health. Trends in Plant Sciences, 17, 478‒486. DOI: http://doi. org/10.1016/j.tplants.2012.04.001
- Breidenbach, B., Pump, J., Dumont, M.G. (2016). Microbial community structure in the rhizosphere of rice plants. Frontiers in Microbiology, 6, 1537‒1549. DOI: http:// doi.org/10.3389/fmicb.2015.01537
- Broeckling, C.D., Broz, A.K., Bergelson, J., Manter, D.K., Vivanco, J.M. (2008). Root exudates regulate soil fungal community composition and diversity. Applied and Environmental Microbiology, 74, 738–744. DOI: http:// doi.org/10.1128/AEM.02188-07
- Chaparro, J.M., Badri, D.V., Vivanco, J.M. (2014). Rhizosphere microbiome assemblage is affected by plant development. International Society for Microbial Ecology Journal, 8, 790–803. DOI: http://doi.org/10.1038/ ismej.2013.196
- Chiarini, L., Bevivino, A., Dalmastri, C., Nacamulli, C., Tabacchioni, S. (1998). Influence of plant development, cultivar and soil type on microbial colonization of maize roots. Applied Soil and Ecology, 8, 11–18. DOI: https://doi.org/10.1016/S0929-1393(97)00071-1
- da Rocha, U.N., van Overbeek, L., van Elsas, J.D. (2009). Exploration of hithertouncultured bacteria from the rhizosphere. FEMS Microbiology Ecology, 69, 313‒328. DOI: https://doi.org/10.1111/j.1574- 6941.2009.00702.x
- Ettema, C.H., Wardle, D.A. (2002). Spatial soil ecology. Trends in Ecology & Evolution, 17, 177‒183. DOI: https://doi. org/10.1016/S0169-5347(02)02496-5
- Ferreira, E.P.deB., Dusi, A.N., Xavier, G.R., Rumjanek, N.G. (2008). Rhizosphere bacterial communities of potato cultivars evaluated through PCR-DGGE profiles. Pesquisa Agropecuária Brasileira, 43, 605‒612. DOI: http://dx.doi.org/10.1590/S0100-204X2008000500008
- Franklin, R.B., Mills, A.L. (2003). Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field. FEMS Microbiology Ecology, 44, 335‒346. DOI: https://doi. org/10.1016/S0168-6496(03)00074-6
- Gomes, N.C.M., Fagbola, O., Costa, R., Rumjanek, N.G., Buchner, A., Mendona-Hagler, L., Smalla, K. (2003). Dynamics of fungal communities in bulk and maize rhizosphere soil in the Tropics. Applied and Environmental Microbiology, 69, 3758‒3766. DOI: http://doi. org/10.1128/AEM.69.7.3758-3766.2003
- Grayer, R.J., Vieira, R.F., Price, A.M., Kite, G.C., Simon, J.E., Paton, A.J. (2004). Characterization of cultivars within species of Ocimum by exudate flavonoid profiles. Biochemical Systematics and Ecology, 32, 901‒913. DOI: https://doi.org/10.1016/j.bse.2004.04.002
- Griffiths, B.S., Ritz, K., Ebblewhite, N., Dobson, G. (1999). Soil microbial community structure: effects of substrate loading rates. Soil Biology and Biochemistry, 31, 145‒153. DOI: https://doi.org/10.1016/S0038- 0717(98)00117-5
- Hannula, S.E., de Boer, W., van Veen, J.A. (2010). In situ dynamics of soil fungal communities under different genotypes of potato, including a genetically modified cultivar. Soil Biology and Biochemistry, 42, 2211–2223. DOI: https://doi.org/10.1016/j.soilbio.2010.08.020
- Hannula, S.E., de Boer, W., van Veen, J. A. (2012). 3-year study reveals that plant growth stage, season and field site affect soil fungal communities while cultivar and GM-Trait have minor effects. PLoS ONE, 7, e33819. DOI : https://doi.org/10.1371/journal.pone.0033819
- Inceoğlu, Ö., Salles, J.F., van Elsas, J.D. (2012). Soil and cultivar type shape the bacterial community in the potato rhizosphere. Microbial Ecology, 63, 2, 460‒470. DOI: https://doi.org/10.1007/s00248-011-9930-8
- Inceoğlu, Ö., Sablayrolles, C., van Elsas, J.D., Salles, J.F. (2013). Shifts in soil bacterial communities associated with the potato rhizosphere in response to aromatic sulfonate amendments. Applied Soil Ecology, 63, 78–87. DOI: https://doi.org/10.1016/j.apsoil.2012.09.004
- Jossi, M., Fromin, N., Tarnawski, S., Kohler, F., Gillet, F., Aragno M., Haùelin J. (2006). How elevated pCO2 modifies total and metabolically active bacterial communities in the rhizosphere of two perennial grasses grown under field conditions. FEMS Microbiology Ecology, 55, 339–350. DOI: https://doi.org/10.1111/ j.1574-6941.2005.00040.x
- Kerdchoechuen, O. (2005). Methane emission in four rice varieties as related to sugars and organic acids of roots and root exudates and biomass yield. Agriculture Ecosystems & Environment, 108, 2, 155‒163. DOI: https:// doi.org/10.1016/j.agee.2005.01.004
- Keswani, C., Dilnashin, H., Birla, H., Singh, S.P. (2019). Unravelling efficient applications of agriculturally important microorganisms for alleviation of induced inter-cellular oxidative stress in crops. Acta Agriculturae Slovenica, 114, 121–130. DOI: http://dx.doi. org/10.14720/aas.2019.114.1.14
- Kim, J.M., Roh, A.S., Choi, S.C., Kim, E.J., Choi, M.T., Ahn, B.K., Kim, S.K., Lee, Y.H., Joa, J.H., Kang, S.S., Lee, S.A., Ahn, J.H., Song, J, Weon, H.Y. (2016). Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea. Journal of Microbiology, 54, 12, 838–845. DOI https://doi.org/10.1007/s12275-016-6526-5
- Liddell, K., Krivtsov, V., Staines H., Brendler, A., Garside, A., Griffiths, B. (2007). A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology, 57, 4, 467–484. DOI: https://doi. org/10.1163/157075607782232189
- Larkin, R.P., Honeycutt, C.W. (2006). Effect of different 3-year cropping systems on soil microbial communities and Rhizoctonia diseases of potato. Phytopathology, 96, 69‒79. DOI: https://doi.org/10.1094/PHYTO-96-0068
- Lauber, C.L., Strickland, M.S., Bradford, M.A., Fierer, N. (2008). The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biology and Biochemistry, 40, 9, 2407–2415. DOI: https://doi.org/10.1016/j.soilbio.2008.05.021
- Lozupone, C.A., Knight, R. (2007). Global patterns in bacterial diversity. Proceedings of the National Academy of Sciences of the United States of America, 104, 27, 11436– 11440. DOI: https://doi.org/10.1073/pnas.0611525104
- Ma, J.C., Ibekwe, A.M., Yang, C.H., Crowley, D.E. (2016). Bacterial diversity and composition in major fresh produce growing soils affected by physiochemical properties and geographic locations. Science of the Total Environment, 563, 199–209. DOI: https://doi.org/10.1016/j. scitotenv.2016.04.122
- Mardanova, A., Lutfullin, M., Hadieva, G., Akosah, Y., Pudova, D., Kabanov, D., Shagimardanova, E., Vankov, P., Vologin, S., Gogoleva, N., Stasevski, Z., Sharipova, M. (2019). Structure and variation of root associated microbiomes of potato grown in alfisol. World Journal of Microbiology and Biotechnology, 35, 181‒197. Retrieved from https://link.springer.com/article/10.1007/ s11274-019-2761-3
- McDonald, L.M., Paterson, E., Dawson, L.A., Mc Donald, A.J.S. (2004). Short-term effects of defoliation on the soil microbial community associated with two contrasting Lolium perenne cultivars. Soil Biology and Biochemistry, 36, 3, 489‒498. DOI: https://doi. org/10.1016/j.soilbio.2003.11.001
- Marques, J.M., da Silva, T.F., Vollu, R.E., Blank, A.F., Ding, G.C., Seldin, L., Smalla, K. (2014). Plant age and genotype affect the bacterial community composition in the tuber rhizosphere of field-grown sweet potato plants. FEMS Microbiology Ecology, 88, 2, 424–435. DOI: https://doi.org/10.1111/1574-6941.12313
- Marschner, P., Kandeler, E., Marschner, B. (2003). Structure and function of the soil microbial community in a longterm fertilizer experiment. Soil Biology and Biochemistry, 35, 3, 453–461. DOI: https://doi.org/10.1016/ S0038-0717(02)00297-3
- Min, W., Guo, H., Zhang, W., Zhou, G., Ma, L., Ye, J., Liang, Y., Hou, Z. (2016). Response of soil microbial community and diversityto increasing water salinity and nitrogen fertilization rate inan arid soil. Acta Agriculturae Scandinavica Section B, 66, 2, 117–126. DOI: https:// doi.org/10.1080/09064710.2015.1078838
- Nelson, D.R., Mele, P.M. (2006). The impact of crop residue amendments and lime on microbial community structure and nitrogen-fixing bacteria in the wheat rhizosphere. Australian Journal of Soil Research, 44, 4, 319– 329. DOI: https://doi.org/10.1071/SR06022
- Nunan, N., Wu, K., Young, I.M., Crawford, J.W., Ritz, K. (2002). In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil. Microbial Ecology, 44, 296‒305. DOI: http://doi. org/10.1007/s00248-002-2021-0
- Pfeiffer, S., Mitter, B., Oswald, A., Schloter-Hai, B., Schloter, M., Declerck, S., Sessitsch, A., 2017. Rhizosphere microbiomes of potato cultivated in the high Andes show stable and dynamic core microbiomes with different responses to plant development. FEMS Microbiology Ecology, 93, 2, 1‒12. DOI: https://doi.org/10.1093/ femsec/fiw242
- Rousk, J., Baååth, E., Brookes, P.C., Lauber, C.L., Lozupone, C., Caporaso, J.G., Knight, R., Fierer, N. (2010). Soil bacterial and fungal communities across a Ph gradient in an arable soil.International Society for Microbial Ecology Journal, 4, 1340–1351. Retrieved from https:// www.nature.com/articles/ismej201058
- Singh, H.B, Sarma, B.K., Keswani, C. (2017). Advances in PGPR Research. CABI, Wallingford, UK. 408 pages. ISBN-9781786390325.
- Sun, L., Gao, J., Huang, T., Kendall, J.R.A., Shen, Q., Zhang, R. (2015). Parental material and cultivation determine soil bacterial community structure and fertility. FEMS Microbiology Ecology, 91, 1–10.
- Sung, K., Kim, J., Munster, C.L., Corapcioglu, M.Y., Park, S., Drew, M.C., Chang, Y.Y. (2006). A simple approach to modeling microbial biomass in the rhizosphere. Ecological Modelling, 190, 3-4, 277‒286. DOI: https://doi. org/10.1016/j.ecolmodel.2005.04.020
- Turpault, M.P., Gobran, G.R., Bonnaud, P. (2007). Temporal variations of rhizosphere and bulk soil chemistry in a Douglas fir stand. Geoderma, 137, 490–496. DOI: https://doi.org/10.1016/j.geoderma.2006.10.005
- van der Heijden, M.G.A., Wagg, C. (2013). Soil microbial diversity and agro-ecosystem functioning. Plant and Soil, 363, 1–5. DOI: http://dx.doi.org/10.1007/s11104-012- 1321-5
- van Overbeek, L., van Elsas, J.D. (2008). Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.). FEMS Microbiology Ecology, 64, 2, 283–296. DOI: https://doi.org/10.1111/j.1574-6941.2008.00469.x
- Wang, G.H., Xu, Y.X., Jin, J., Liu, J.D., Zhang, Q.Y., Liu X.B. (2009). Effect of soil type and soybean genotype on fungal community in soybean rhizosphere during reproductive growth stages. Plant and Soil, 317, 135–144. DOI: http://doi.org/10.1007/s11104-008-9794-y
- Weinert, N., Piceno, Y., Ding, G.C., Meincke, R., Heuer, H., Gabriele, Berg. G., Schloter, M., Andersen, G., Smalla, K. (2011). PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa. FEMS Microbiology Ecology, 75, 3, 497–506. DOI: https://doi.org/10.1111/j.1574- 6941.2010.01025.x
- Winston, M.E., Hampton-Marcell, J., Zarraonaindia, I., Owens, S.M., Moreau, C.S., Gilbert J.A., Hartsel J, Kennedy S.J., Gibbons S.M. (2014). Understanding Cultivar-Specificity and Soil Determinants of the Cannabis Microbiome. PLoS ONE, 9, e99641. DOI: http://doi. org/10.1371/journal.pone.0099641
- Xu, H.J., Li, S., Su, J.Q., Nie, S.A., Gibson, V., Li, H., Zhu, Y.G. (2014). Does urbanization shape bacterial community composition in urban park soils? a case study in 16 representative Chinese cities based on the pyrosequencing method. FEMS Microbiology Ecology, 87, 1, 182– 192. DOI: https://doi.org/10.1111/1574-6941.12215
| APA | ABDALLAH R, JABNOUN KHİAREDDİNE H, DAAMİ REMADİ M (2020). Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. , 319 - 333. 10.31015/jaefs.2020.3.11 |
| Chicago | ABDALLAH Rania Aydi Ben,JABNOUN KHİAREDDİNE Hayfa,DAAMİ REMADİ Mejda Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. (2020): 319 - 333. 10.31015/jaefs.2020.3.11 |
| MLA | ABDALLAH Rania Aydi Ben,JABNOUN KHİAREDDİNE Hayfa,DAAMİ REMADİ Mejda Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. , 2020, ss.319 - 333. 10.31015/jaefs.2020.3.11 |
| AMA | ABDALLAH R,JABNOUN KHİAREDDİNE H,DAAMİ REMADİ M Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. . 2020; 319 - 333. 10.31015/jaefs.2020.3.11 |
| Vancouver | ABDALLAH R,JABNOUN KHİAREDDİNE H,DAAMİ REMADİ M Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. . 2020; 319 - 333. 10.31015/jaefs.2020.3.11 |
| IEEE | ABDALLAH R,JABNOUN KHİAREDDİNE H,DAAMİ REMADİ M "Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage." , ss.319 - 333, 2020. 10.31015/jaefs.2020.3.11 |
| ISNAD | ABDALLAH, Rania Aydi Ben vd. "Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage". (2020), 319-333. https://doi.org/10.31015/jaefs.2020.3.11 |
| APA | ABDALLAH R, JABNOUN KHİAREDDİNE H, DAAMİ REMADİ M (2020). Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. International Journal of Agriculture, Environment and Food Sciences, 4(3), 319 - 333. 10.31015/jaefs.2020.3.11 |
| Chicago | ABDALLAH Rania Aydi Ben,JABNOUN KHİAREDDİNE Hayfa,DAAMİ REMADİ Mejda Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. International Journal of Agriculture, Environment and Food Sciences 4, no.3 (2020): 319 - 333. 10.31015/jaefs.2020.3.11 |
| MLA | ABDALLAH Rania Aydi Ben,JABNOUN KHİAREDDİNE Hayfa,DAAMİ REMADİ Mejda Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. International Journal of Agriculture, Environment and Food Sciences, vol.4, no.3, 2020, ss.319 - 333. 10.31015/jaefs.2020.3.11 |
| AMA | ABDALLAH R,JABNOUN KHİAREDDİNE H,DAAMİ REMADİ M Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. International Journal of Agriculture, Environment and Food Sciences. 2020; 4(3): 319 - 333. 10.31015/jaefs.2020.3.11 |
| Vancouver | ABDALLAH R,JABNOUN KHİAREDDİNE H,DAAMİ REMADİ M Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage. International Journal of Agriculture, Environment and Food Sciences. 2020; 4(3): 319 - 333. 10.31015/jaefs.2020.3.11 |
| IEEE | ABDALLAH R,JABNOUN KHİAREDDİNE H,DAAMİ REMADİ M "Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage." International Journal of Agriculture, Environment and Food Sciences, 4, ss.319 - 333, 2020. 10.31015/jaefs.2020.3.11 |
| ISNAD | ABDALLAH, Rania Aydi Ben vd. "Variation in the composition of the microbial community in the rhizosphere of potato plants depending on cropping season, cultivar type, and plant development stage". International Journal of Agriculture, Environment and Food Sciences 4/3 (2020), 319-333. https://doi.org/10.31015/jaefs.2020.3.11 |
