Yıl: 2021 Cilt: 6 Sayı: 1 Sayfa Aralığı: 66 - 71 Metin Dili: İngilizce DOI: 10.35229/jaes.832315 İndeks Tarihi: 25-06-2021

Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains

Öz:
Xanthomonas arboricola pathovar corylina (Xac) causes a bacterial blight disease(BBD) resulting in economic losses in young hazelnut trees worldwide. Although virulent Xacgenomes were sequenced, there is no comparative genomics study on these genomes. In thisstudy, all publicly available whole-genome sequences of Xac were compared by a comparativegenomics approach. The results showed that Xac CFBP1159 and Xac CFBP2565 genomes arephylogenetically related to each other based on the orthology results. The genomic diversificationof Xac strains was depended on mobile genetic elements. Interestingly, Xac NCCB100457genome had additional motility genes than Xac CFBP1159 and XacCFBP2565 genomes. All Xacgenomes had shared virulence-related genes such as secretion systems and adherence factors. Thecomparative genomics approach of this study supports that Xac genomes have slight geneticvariations, and the virulence-related proteins interacted with the host proteins. This comparativegenomics approach will provide insights into the understanding of the Xac genomes.
Anahtar Kelime:

Fitopatojenik Xanthomonas arboricola patovar corylina Suşlarına Karşılaştırmalı Genomik Bakış

Öz:
Xanthomonas arboricola patovar corylina (Xac), Dünya çapında genç fındık ağaçlarında ekonomik kayıplarla sonuçlanan fındık bakteriyel yanıklığı hastalığına neden olmaktadır. Virülent Xac suşlarının tüm genomları dizilenmiş olmasına rağmen, bu genomlar üzerinde bir karşılaştırmalı genomik çalışma yoktur. Bu çalışmada, Xac suşlarının halka açık tüm genom dizileri, karşılaştırmalı genomik yaklaşım kullanılarak karşılaştırılmıştır. Elde edilen sonuçlarda, Xac CFBP1159 ve Xac CFBP2565 genomlarının, ortoloji sonucuna göre filogenetik olarak birbirleriyle daha yakın ilişkili olduğu saptanmıştır. Xac suşlarının genomik çeşitliliğinin mobil genetik elementlerle ilişkişi olduğu anlaşılmıştır. İlginç bir şekilde, Xac NCCB100457 genomu, Xac CFBP1159 ve Xac CFBP2565 genomlarından daha fazla motilite genlerine sahiptir. Tüm Xac genomları, sekresyon sistemleri ve adhezyon faktörleri gibi virülans ile ilgili ortak genlere sahiptir. Bu çalışmanın karşılaştırmalı genomik yaklaşımı, Xac genomlarının bazı genetik varyasyonlara sahip olduğu ve virülans ile ilgili proteinlerin konakçı proteinlerle etkileşime girdiğini desteklemektedir. Bu çalışmanın karşılaştırmalı genomik yaklaşımı, Xac genomlarının anlaşılması için bir öngörü sağlamıştır.
Anahtar Kelime:

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık
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APA Kalindamar S (2021). Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. , 66 - 71. 10.35229/jaes.832315
Chicago Kalindamar Safak Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. (2021): 66 - 71. 10.35229/jaes.832315
MLA Kalindamar Safak Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. , 2021, ss.66 - 71. 10.35229/jaes.832315
AMA Kalindamar S Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. . 2021; 66 - 71. 10.35229/jaes.832315
Vancouver Kalindamar S Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. . 2021; 66 - 71. 10.35229/jaes.832315
IEEE Kalindamar S "Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains." , ss.66 - 71, 2021. 10.35229/jaes.832315
ISNAD Kalindamar, Safak. "Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains". (2021), 66-71. https://doi.org/10.35229/jaes.832315
APA Kalindamar S (2021). Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES, 6(1), 66 - 71. 10.35229/jaes.832315
Chicago Kalindamar Safak Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES 6, no.1 (2021): 66 - 71. 10.35229/jaes.832315
MLA Kalindamar Safak Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES, vol.6, no.1, 2021, ss.66 - 71. 10.35229/jaes.832315
AMA Kalindamar S Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES. 2021; 6(1): 66 - 71. 10.35229/jaes.832315
Vancouver Kalindamar S Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES. 2021; 6(1): 66 - 71. 10.35229/jaes.832315
IEEE Kalindamar S "Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains." JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES, 6, ss.66 - 71, 2021. 10.35229/jaes.832315
ISNAD Kalindamar, Safak. "Comparative Genomics Insight into Phytopathogenic Xanthomonas arboricola pathovar corylina Strains". JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES 6/1 (2021), 66-71. https://doi.org/10.35229/jaes.832315