Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması

BAŞIBÜYÜK, Hasan Hüseyin; KORKMAZ, Ertan Mahir; ÖRGEN, Sevda Hastaoğlu; Budak, Mahir; SARI, MUSA

Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması

Yürütücü

Ertan Mahir KORKMAZ (Cumhuriyet Üniversitesi, Fen Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, Sivas, Türkiye)

Araştırmacı(lar)

Hasan Hüseyin BAŞIBÜYÜK, (Cumhuriyet Üniversitesi, Fen Edebiyat Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, Sivas, Türkiye)

MUSA SARI, (Cumhuriyet Üniversitesi, Fen Edebiyat Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, Sivas, Türkiye)

Sevda Hastaoğlu ÖRGEN, (Cumhuriyet Üniversitesi, Fen Edebiyat Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, Sivas, Türkiye)

Mahir BUDAK (Cumhuriyet Üniversitesi, Fen Edebiyat Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, Sivas, Türkiye)

6 9

Proje Grubu: KBAG Sayfa Sayısı: 205 Proje No: 112T418 Proje Bitiş Tarihi: 01.11.2015 Metin Dili: Türkçe İndeks Tarihi: 08-05-2019

Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması

Öz:

Bu çalışmada Hymenoptera takımını temsilen 20 türün mitogenom verisi standart ve yeni nesil dizileme yaklaşımları ile üretilmiş ve biyoinformatik uygulamalarla karakterize edilmiş ve diğer bilinen Hymenoptera mitogenomları ile karşılaştırmalı analizleri yapılmıştır. Bu 331.832 bç’den oluşan büyük hacimli verisetinin, 204.182 bç Cephidae olmak üzere 297.961 bç Symphyta ve 33.871 bç ise Apocrita temsilcilerine aittir. Hymenoptera mitogenom uzunluklarının Cephidae dışında (19-26 kb) normal aralıkta oldukları saptanmıştır. Bu uzamanın özellikle A+T’ce zengin bölgeden kaynaklandığı ve uzamaların replikasyon ve transkripsiyonda işlevsel olabileceği önerilmiştir. A+T yönünde eğilim saptanan Hymenoptera mitogenomlarında, gen yeniden düzenlenmelerinin tRNA’lar açısından zengin olduğu ve Apocrita alttakımında olduğu kadar Symphyta temsilcilerinde de sık karşılaşıldığı gözlenmiştir. Bazı protein kodlayan genlerde alışıldık olmayan başlama kodonlarının kullanımı bulunmuş ve bu kodonların genler arası bölgeleri minimuma düşürme ve komşu genler arasındaki üst üste örtüşen bölgelere engel olmada işlevsel oldukları önerilmiştir. Symphyta mitogenomlartında rRNA genlerinin ikincil yapıları inşa edilerek karakterize edilmiş ve rrnS geninde yer alan H1303 heliksinin filogenetik açıdan kullanışlı bir belirteç olabileceği saptanmıştır. Ortalama GC eğri değerinin Symphyta alttakımına oranla Cephidae temsilcilerinde daha düşük düzeyde olduğu ve bu durum Cephidae familyasında yüksek oranda konak değişimlerinin oluşturduğu adaptasyonel süreçlerden kaynaklı olabileceği önerilmiştir. Hymenoptera filogenisinin 73 mitogenom veriseti kullanılarak inşa edilmesi sonucunda Symphyta ve Apocrita arasındaki ilişki ortaya konulmuş ve takım içerisinde testereli arıların parafiletik bir soyhattı oluşturdukları gözlenmiştir. Cephidae filogenisinde cinslerin monofilisi desteklenirken, tribus monofilisi desteklenmemiş ve bu nedenle familyanın yeni bir taksonomik değerlendirmeye ihtiyacı olduğu önerilmiştir. Ayrıca, Cephidae filogenisi sonucunda fitofag yaşam tarzı evriminin bu grupta türleşmeyi tetiklemiş olduğu ve konak kaymalarının çoklu kez yaşanmış olabileceği ileri sürülmüştür.

Anahtar Kelime: gen yeniden düzenlenmeleri tekrarlı diziler A+T’ce zengin bölge zincir asimetrisi filogeni buğday sap arıları testereli arılar mitogenom ikincil yapılar

Konular: Biyoloji Biyokimya ve Moleküler Biyoloji Malzeme Bilimleri, Biyomalzemeler

Erişim Türü: Erişime Açık

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APA	KORKMAZ E, BAŞIBÜYÜK H, SARI M, ÖRGEN S, Budak M (2015). Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. , 1 - 205.
Chicago	KORKMAZ Ertan Mahir,BAŞIBÜYÜK Hasan Hüseyin,SARI MUSA,ÖRGEN Sevda Hastaoğlu,Budak Mahir Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. (2015): 1 - 205.
MLA	KORKMAZ Ertan Mahir,BAŞIBÜYÜK Hasan Hüseyin,SARI MUSA,ÖRGEN Sevda Hastaoğlu,Budak Mahir Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. , 2015, ss.1 - 205.
AMA	KORKMAZ E,BAŞIBÜYÜK H,SARI M,ÖRGEN S,Budak M Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. . 2015; 1 - 205.
Vancouver	KORKMAZ E,BAŞIBÜYÜK H,SARI M,ÖRGEN S,Budak M Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. . 2015; 1 - 205.
IEEE	KORKMAZ E,BAŞIBÜYÜK H,SARI M,ÖRGEN S,Budak M "Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması." , ss.1 - 205, 2015.
ISNAD	KORKMAZ, Ertan Mahir vd. "Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması". (2015), 1-205.

APA	KORKMAZ E, BAŞIBÜYÜK H, SARI M, ÖRGEN S, Budak M (2015). Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. , 1 - 205.
Chicago	KORKMAZ Ertan Mahir,BAŞIBÜYÜK Hasan Hüseyin,SARI MUSA,ÖRGEN Sevda Hastaoğlu,Budak Mahir Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. (2015): 1 - 205.
MLA	KORKMAZ Ertan Mahir,BAŞIBÜYÜK Hasan Hüseyin,SARI MUSA,ÖRGEN Sevda Hastaoğlu,Budak Mahir Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. , 2015, ss.1 - 205.
AMA	KORKMAZ E,BAŞIBÜYÜK H,SARI M,ÖRGEN S,Budak M Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. . 2015; 1 - 205.
Vancouver	KORKMAZ E,BAŞIBÜYÜK H,SARI M,ÖRGEN S,Budak M Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması. . 2015; 1 - 205.
IEEE	KORKMAZ E,BAŞIBÜYÜK H,SARI M,ÖRGEN S,Budak M "Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması." , ss.1 - 205, 2015.
ISNAD	KORKMAZ, Ertan Mahir vd. "Bazal Hymenoptera (Insecta) Familyalarında Mitokondri Genomunun Evrimi: Hymenoptera Filogenisinin Yeniden Yapılandırılması". (2015), 1-205.